Commit c6c9dc9ad154946b84211e64c5a0dd80532421fd

Authored by Dany Dumont
1 parent 34525fb8
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README.md
1   -
2   -
3   - ----------------------------------------------------
4   - Welcome to the Phytoplankton Lagrangian Model 2014!
5   - ----------------------------------------------------
6 1  
7   - The model has been designed to be very user-friendly, however some modifications
8   - must be done to fit with your machine. So, please read the following steps to
9   - correctly start the model.
10 2  
11   -# 1) COMPILATION:
  3 +Welcome to Phlag, the Phytoplankton Lagrangian Model! The model has been
  4 +designed to be very user-friendly, however some modifications must be done to
  5 +fit with your machine. So, please read the following steps to correctly start
  6 +the model.
  7 +
  8 +### 1) COMPILATION
12 9  
13 10 + Ensure first that `gfortran` is installed on your machine.
14 11 + Ensure that the NETCDF FORTRAN libraries are installed on your machine.
... ... @@ -18,13 +15,13 @@
18 15 + You can also delete all object file and the executable by using the command
19 16 `make mrproper`.
20 17  
21   -# 2) USE THE MODEL
  18 +### 2) USE THE MODEL
22 19  
23 20 + The model use namelists in `nml/` allowing to change some parameter values
24 21 without recompiling the source code.
25 22 + outputs will be generated in the directory `output/`.
26 23  
27   -# 3) USE THE MODEL WITH GOTM
  24 +### 3) USE THE MODEL WITH GOTM
28 25  
29 26 + The model can call GOTM to produce a diffusivity profile. If you want to use
30 27 this feature you have to change the value of the parameter `mix_state`
... ... @@ -33,7 +30,7 @@
33 30 all the GOTM namelists you need in the directory `gotm/`. You should also
34 31 create a symbolic link of the executable in the directory `gotm/`.
35 32  
36   -# 4) USE BATCH MODE
  33 +### 4) USE BATCH MODE
37 34  
38 35 + You can also run the model in batch mode. To do this, you must change the
39 36 file `batch_bio_pbs.sh`.
... ...