Commit 8a16b803 authored by Dany Dumont's avatar Dany Dumont

Other minor changes

parent 7c07b1cc
Welcome to Phlag, the Phytoplankton Lagrangian Model! The model has been
designed to be very user-friendly, however some modifications must be done to
fit with your machine. So, please read the following steps to correctly start
the model.
### 1) COMPILATION
#### 1. Compile the model
+ Ensure first that `gfortran` is installed on your machine.
+ Ensure that the NETCDF FORTRAN libraries are installed on your machine.
......@@ -15,13 +14,13 @@ the model.
+ You can also delete all object file and the executable by using the command
`make mrproper`.
### 2) USE THE MODEL
#### 2. Use the model
+ The model use namelists in `nml/` allowing to change some parameter values
without recompiling the source code.
+ outputs will be generated in the directory `output/`.
### 3) USE THE MODEL WITH GOTM
#### 3. Use the model with GOTM
+ The model can call GOTM to produce a diffusivity profile. If you want to use
this feature you have to change the value of the parameter `mix_state`
......@@ -30,14 +29,14 @@ the model.
all the GOTM namelists you need in the directory `gotm/`. You should also
create a symbolic link of the executable in the directory `gotm/`.
### 4) USE BATCH MODE
#### 4. Use the model in the batch mode
+ You can also run the model in batch mode. To do this, you must change the
file `batch_bio_pbs.sh`.
Have fun!
For question, please contact me at mailto:baudryjeremy@gmail.com
For question, please contact me at baudryjeremy@gmail.com
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