The model has been designed to be very user-friendly, however some modifications must be done to fit with your machine. So, please read the following steps to correctly start the model.
Compilation
- Ensure first that
gfortran
is installed on your machine. - Ensure that the NETCDF FORTRAN libraries are installed on your machine.
- Change the path for the NETCDF FORTRAN module and libraries in the makefile.
- Compile the source codes using the command
make
. The executable will be created in the parent directory. - You can also delete all object file and the executable by using the command
make mrproper
.
Use the model
- The model use namelists in
nml/
allowing to change some parameter values without recompiling the source code. - Outputs will be generated in the directory
output/
.
Use the model with GOTM
- The model can call GOTM to produce a diffusivity profile. If you want to use this feature you have to change the value of the parameter
mix_state
in the namelistmodel_parameter
. - Before doing this, ensure that GOTM is installed on your machine and copy all the GOTM namelists you need in the directory
gotm/
. You should also create a symbolic link of the executable in the directorygotm/
.
Use the batch mode
- You can also run the model in batch mode. To do this, you must change the
batch_bio_pbs.sh
.
Have fun!
For question, please contact me at baudryjeremy@gmail.com.