Commit f9242fcd authored by Dany Dumont's avatar Dany Dumont

Minor changes

parent efeab549
...@@ -5,45 +5,43 @@ ...@@ -5,45 +5,43 @@
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The model has been designed to be very user-friendly, however some modifications The model has been designed to be very user-friendly. However some modifications
must be done to fit with your machine. must be done to work on your machine, so please read the following steps to
So, please read the following steps to correctly start the model. correctly start the model.
1) COMPILATION
1) COMPILATION: - Ensure first that gfortran is installed on your machine.
- Ensure that the NETCDF FORTRAN libraries are installed on your machine.
-Ensure first that gfortran is installed on your machine. - Change the path for the NETCDF FORTRAN module and libraries in the makefile.
-Ensure that the NETCDF FORTRAN libraries are installed on your machine. - Compile the source codes using the command 'make'. The executable will be
-Change the path for the NETCDF FORTRAN module and libraries in the makefile
-compile the source codes using the command «make». The executable will be
created in the parent directory. created in the parent directory.
- you can also delete all object file and the executable by using the command «make mrproper» - You can also delete all object file and the executable by using the command
'make mrproper'.
2) USE THE MODEL 2) USE THE MODEL
- The model use namelists in nml/ allowing to change some parameter values without recompiling - The model use namelists in nml/ allowing to change some parameter values
the source code without recompiling the source code.
- outputs will be generated in the directory output/ - Outputs will be generated in the directory output/.
3) USE THE MODEL WITH GOTM 3) USE THE MODEL WITH GOTM
- The model can call GOTM to produce a diffusivity profile. If you want to use this feature - The model can call GOTM to produce a diffusivity profile. If you want to
you have to change the value of the parameter «mix_state» in the namelist model_parameter use this feature you have to change the value of the parameter 'mix_state'
- Before doing this, ensure that GOTM is installed on your machine and copy all the GOTM namelists in the namelist 'model_parameter'.
you need in the directory gotm/. You should also create a symbolic link of the executable in the - Before doing this, ensure that GOTM is installed on your machine and copy
directory gotm/ all the GOTM namelists you need in the directory gotm/. You should also
create a symbolic link of the executable in the directory gotm/.
4) USE BATCH MODE 4) USE BATCH MODE
- you can also run the model in batch mode. To do this, you must change the file - You can also run the model in batch mode. To do this, you must change the
batch_bio_pbs.sh file batch_bio_pbs.sh
have fun
Have fun!
for question, please contact me at baudryjeremy@gmail.com For question, please contact me at baudryjeremy@gmail.com
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