Commit c6c9dc9a authored by Dany Dumont's avatar Dany Dumont

Other minor changes

parent 34525fb8
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Welcome to the Phytoplankton Lagrangian Model 2014!
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Welcome to Phlag, the Phytoplankton Lagrangian Model! The model has been
designed to be very user-friendly, however some modifications must be done to
fit with your machine. So, please read the following steps to correctly start
the model.
The model has been designed to be very user-friendly, however some modifications
must be done to fit with your machine. So, please read the following steps to
correctly start the model.
# 1) COMPILATION:
### 1) COMPILATION
+ Ensure first that `gfortran` is installed on your machine.
+ Ensure that the NETCDF FORTRAN libraries are installed on your machine.
......@@ -18,13 +15,13 @@
+ You can also delete all object file and the executable by using the command
`make mrproper`.
# 2) USE THE MODEL
### 2) USE THE MODEL
+ The model use namelists in `nml/` allowing to change some parameter values
without recompiling the source code.
+ outputs will be generated in the directory `output/`.
# 3) USE THE MODEL WITH GOTM
### 3) USE THE MODEL WITH GOTM
+ The model can call GOTM to produce a diffusivity profile. If you want to use
this feature you have to change the value of the parameter `mix_state`
......@@ -33,7 +30,7 @@
all the GOTM namelists you need in the directory `gotm/`. You should also
create a symbolic link of the executable in the directory `gotm/`.
# 4) USE BATCH MODE
### 4) USE BATCH MODE
+ You can also run the model in batch mode. To do this, you must change the
file `batch_bio_pbs.sh`.
......
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