Commit c6c9dc9a authored by Dany Dumont's avatar Dany Dumont
Browse files

Other minor changes

parent 34525fb8
---------------------------------------------------- Welcome to Phlag, the Phytoplankton Lagrangian Model! The model has been
Welcome to the Phytoplankton Lagrangian Model 2014! designed to be very user-friendly, however some modifications must be done to
---------------------------------------------------- fit with your machine. So, please read the following steps to correctly start
the model.
The model has been designed to be very user-friendly, however some modifications ### 1) COMPILATION
must be done to fit with your machine. So, please read the following steps to
correctly start the model.
# 1) COMPILATION:
+ Ensure first that `gfortran` is installed on your machine. + Ensure first that `gfortran` is installed on your machine.
+ Ensure that the NETCDF FORTRAN libraries are installed on your machine. + Ensure that the NETCDF FORTRAN libraries are installed on your machine.
...@@ -18,13 +15,13 @@ ...@@ -18,13 +15,13 @@
+ You can also delete all object file and the executable by using the command + You can also delete all object file and the executable by using the command
`make mrproper`. `make mrproper`.
# 2) USE THE MODEL ### 2) USE THE MODEL
+ The model use namelists in `nml/` allowing to change some parameter values + The model use namelists in `nml/` allowing to change some parameter values
without recompiling the source code. without recompiling the source code.
+ outputs will be generated in the directory `output/`. + outputs will be generated in the directory `output/`.
# 3) USE THE MODEL WITH GOTM ### 3) USE THE MODEL WITH GOTM
+ The model can call GOTM to produce a diffusivity profile. If you want to use + The model can call GOTM to produce a diffusivity profile. If you want to use
this feature you have to change the value of the parameter `mix_state` this feature you have to change the value of the parameter `mix_state`
...@@ -33,7 +30,7 @@ ...@@ -33,7 +30,7 @@
all the GOTM namelists you need in the directory `gotm/`. You should also all the GOTM namelists you need in the directory `gotm/`. You should also
create a symbolic link of the executable in the directory `gotm/`. create a symbolic link of the executable in the directory `gotm/`.
# 4) USE BATCH MODE ### 4) USE BATCH MODE
+ You can also run the model in batch mode. To do this, you must change the + You can also run the model in batch mode. To do this, you must change the
file `batch_bio_pbs.sh`. file `batch_bio_pbs.sh`.
......
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