Commit 8a16b803 authored by Dany Dumont's avatar Dany Dumont
Browse files

Other minor changes

parent 7c07b1cc
Welcome to Phlag, the Phytoplankton Lagrangian Model! The model has been Welcome to Phlag, the Phytoplankton Lagrangian Model! The model has been
designed to be very user-friendly, however some modifications must be done to designed to be very user-friendly, however some modifications must be done to
fit with your machine. So, please read the following steps to correctly start fit with your machine. So, please read the following steps to correctly start
the model. the model.
### 1) COMPILATION #### 1. Compile the model
+ Ensure first that `gfortran` is installed on your machine. + Ensure first that `gfortran` is installed on your machine.
+ Ensure that the NETCDF FORTRAN libraries are installed on your machine. + Ensure that the NETCDF FORTRAN libraries are installed on your machine.
...@@ -15,13 +14,13 @@ the model. ...@@ -15,13 +14,13 @@ the model.
+ You can also delete all object file and the executable by using the command + You can also delete all object file and the executable by using the command
`make mrproper`. `make mrproper`.
### 2) USE THE MODEL #### 2. Use the model
+ The model use namelists in `nml/` allowing to change some parameter values + The model use namelists in `nml/` allowing to change some parameter values
without recompiling the source code. without recompiling the source code.
+ outputs will be generated in the directory `output/`. + outputs will be generated in the directory `output/`.
### 3) USE THE MODEL WITH GOTM #### 3. Use the model with GOTM
+ The model can call GOTM to produce a diffusivity profile. If you want to use + The model can call GOTM to produce a diffusivity profile. If you want to use
this feature you have to change the value of the parameter `mix_state` this feature you have to change the value of the parameter `mix_state`
...@@ -30,14 +29,14 @@ the model. ...@@ -30,14 +29,14 @@ the model.
all the GOTM namelists you need in the directory `gotm/`. You should also all the GOTM namelists you need in the directory `gotm/`. You should also
create a symbolic link of the executable in the directory `gotm/`. create a symbolic link of the executable in the directory `gotm/`.
### 4) USE BATCH MODE #### 4. Use the model in the batch mode
+ You can also run the model in batch mode. To do this, you must change the + You can also run the model in batch mode. To do this, you must change the
file `batch_bio_pbs.sh`. file `batch_bio_pbs.sh`.
Have fun! Have fun!
For question, please contact me at mailto:baudryjeremy@gmail.com For question, please contact me at baudryjeremy@gmail.com
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