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Dany Dumont
phlag
Commits
8a16b803
Commit
8a16b803
authored
Mar 15, 2018
by
Dany Dumont
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README.md
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8a16b803
Welcome to Phlag, the Phytoplankton Lagrangian Model! The model has been
designed to be very user-friendly, however some modifications must be done to
fit with your machine. So, please read the following steps to correctly start
the model.
### 1
)
C
OMPILATION
###
#
1
.
C
ompile the model
+
Ensure first that
`gfortran`
is installed on your machine.
+
Ensure that the NETCDF FORTRAN libraries are installed on your machine.
...
...
@@ -15,13 +14,13 @@ the model.
+
You can also delete all object file and the executable by using the command
`make mrproper`
.
### 2
)
U
SE THE MODEL
###
#
2
.
U
se the model
+
The model use namelists in
`nml/`
allowing to change some parameter values
without recompiling the source code.
+
outputs will be generated in the directory
`output/`
.
### 3
)
U
SE THE MODEL WITH
GOTM
###
#
3
.
U
se the model with
GOTM
+
The model can call GOTM to produce a diffusivity profile. If you want to use
this feature you have to change the value of the parameter
`mix_state`
...
...
@@ -30,14 +29,14 @@ the model.
all the GOTM namelists you need in the directory
`gotm/`
. You should also
create a symbolic link of the executable in the directory
`gotm/`
.
### 4
)
U
SE BATCH MODE
###
#
4
.
U
se the model in the batch mode
+
You can also run the model in batch mode. To do this, you must change the
file
`batch_bio_pbs.sh`
.
Have fun!
For question, please contact me at
mailto:
baudryjeremy@gmail.com
For question, please contact me at baudryjeremy@gmail.com
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