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Commit 765a18ea authored by Dany Dumont's avatar Dany Dumont
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HELP/HOW_TO_USE_THE_MODEL
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The model has been designed to be very user-friendly. However some modifications The model has been designed to be very user-friendly, however some modifications
must be done to work on your machine, so please read the following steps to must be done to fit with your machine.
correctly start the model. So, please read the following steps to correctly start the model.
1) COMPILATION
- Ensure first that gfortran is installed on your machine. 1) COMPILATION:
- Ensure that the NETCDF FORTRAN libraries are installed on your machine.
- Change the path for the NETCDF FORTRAN module and libraries in the makefile. -Ensure first that gfortran is installed on your machine.
- Compile the source codes using the command 'make'. The executable will be -Ensure that the NETCDF FORTRAN libraries are installed on your machine.
created in the parent directory. -Change the path for the NETCDF FORTRAN module and libraries in the makefile
- You can also delete all object file and the executable by using the command
'make mrproper'. -compile the source codes using the command «make». The executable will be
created in the parent directory.
- you can also delete all object file and the executable by using the command «make mrproper»
2) USE THE MODEL 2) USE THE MODEL
- The model use namelists in nml/ allowing to change some parameter values - The model use namelists in nml/ allowing to change some parameter values without recompiling
without recompiling the source code. the source code
- Outputs will be generated in the directory output/. - outputs will be generated in the directory output/
3) USE THE MODEL WITH GOTM 3) USE THE MODEL WITH GOTM
- The model can call GOTM to produce a diffusivity profile. If you want to - The model can call GOTM to produce a diffusivity profile. If you want to use this feature
use this feature you have to change the value of the parameter 'mix_state' you have to change the value of the parameter «mix_state» in the namelist model_parameter
in the namelist 'model_parameter'. - Before doing this, ensure that GOTM is installed on your machine and copy all the GOTM namelists
- Before doing this, ensure that GOTM is installed on your machine and copy you need in the directory gotm/. You should also create a symbolic link of the executable in the
all the GOTM namelists you need in the directory gotm/. You should also directory gotm/
create a symbolic link of the executable in the directory gotm/.
4) USE BATCH MODE 4) USE BATCH MODE
- You can also run the model in batch mode. To do this, you must change the - you can also run the model in batch mode. To do this, you must change the file
file batch_bio_pbs.sh batch_bio_pbs.sh
have fun
Have fun!
For question, please contact me at baudryjeremy@gmail.com for question, please contact me at baudryjeremy@gmail.com
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