Commit 40553ee2 authored by Dany Dumont's avatar Dany Dumont

Ajout de README.md

parent 765a18ea
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Welcome to the Phytoplankton Lagrangian Model 2014!
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The model has been designed to be very user-friendly, however some modifications
must be done to fit with your machine.
So, please read the following steps to correctly start the model.
1) COMPILATION:
-Ensure first that gfortran is installed on your machine.
-Ensure that the NETCDF FORTRAN libraries are installed on your machine.
-Change the path for the NETCDF FORTRAN module and libraries in the makefile
-compile the source codes using the command «make». The executable will be
created in the parent directory.
- you can also delete all object file and the executable by using the command «make mrproper»
2) USE THE MODEL
- The model use namelists in nml/ allowing to change some parameter values without recompiling
the source code
- outputs will be generated in the directory output/
3) USE THE MODEL WITH GOTM
- The model can call GOTM to produce a diffusivity profile. If you want to use this feature
you have to change the value of the parameter «mix_state» in the namelist model_parameter
- Before doing this, ensure that GOTM is installed on your machine and copy all the GOTM namelists
you need in the directory gotm/. You should also create a symbolic link of the executable in the
directory gotm/
4) USE BATCH MODE
- you can also run the model in batch mode. To do this, you must change the file
batch_bio_pbs.sh
have fun
for question, please contact me at baudryjeremy@gmail.com
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