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Dany Dumont
phlag
Commits
34525fb8
Commit
34525fb8
authored
Mar 14, 2018
by
Dany Dumont
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README.md
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34525fb8
----------------------------------------------------
Welcome to the Phytoplankton Lagrangian Model 2014!
----------------------------------------------------
The model has been designed to be very user-friendly, however some modifications
must be done to fit with your machine.
So, please read the following steps to correctly start the model.
# 1) COMPILATION:
+ Ensure first that gfortran is installed on your machine.
+ Ensure that the NETCDF FORTRAN libraries are installed on your machine.
+ Change the path for the NETCDF FORTRAN module and libraries in the makefile
+ compile the source codes using the command «make». The executable will be
created in the parent directory.
+ you can also delete all object file and the executable by using the command «make mrproper»
must be done to fit with your machine. So, please read the following steps to
correctly start the model.
2) USE THE MODEL
# 1) COMPILATION:
- The model use namelists in nml/ allowing to change some parameter values without recompiling
the source code
-
outputs will be generated in the directory output/
+
Ensure first that
`gfortran`
is installed on your machine.
+
Ensure that the NETCDF FORTRAN libraries are installed on your machine.
+
Change the path for the NETCDF FORTRAN module and libraries in the makefile.
+
Compile the source codes using the command
`make`
. The executable will be
created in the parent directory.
+
You can also delete all object file and the executable by using the command
`make mrproper`
.
3
) USE THE MODEL
WITH GOTM
# 2
) USE THE MODEL
- The model can call GOTM to produce a diffusivity profile. If you want to use this feature
you have to change the value of the parameter «mix_state» in the namelist model_parameter
- Before doing this, ensure that GOTM is installed on your machine and copy all the GOTM namelists
you need in the directory gotm/. You should also create a symbolic link of the executable in the
directory gotm/
+
The model use namelists in
`nml/`
allowing to change some parameter values
without recompiling the source code.
+
outputs will be generated in the directory
`output/`
.
4
) USE
BATCH MODE
# 3
) USE
THE MODEL WITH GOTM
- you can also run the model in batch mode. To do this, you must change the file
batch_bio_pbs.sh
+
The model can call GOTM to produce a diffusivity profile. If you want to use
this feature you have to change the value of the parameter
`mix_state`
in the namelist
`model_parameter`
.
+
Before doing this, ensure that GOTM is installed on your machine and copy
all the GOTM namelists you need in the directory
`gotm/`
. You should also
create a symbolic link of the executable in the directory
`gotm/`
.
# 4) USE BATCH MODE
have fun
+
You can also run the model in batch mode. To do this, you must change the
file
`batch_bio_pbs.sh`
.
Have fun!
f
or question, please contact me at baudryjeremy@gmail.com
F
or question, please contact me at
mailto:
baudryjeremy@gmail.com
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