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gotm_ismer
Commit ed3ed5c0 authored by Dany Dumont's avatar Dany Dumont
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Ajout du cas test ghent

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ghent/100m/fig_bio_ismer.jnl 0 → 100644
View file @ ed3ed5c0
! NOAA/PMEL TMAP
! FERRET v6
! Linux(g77) 2.6.9-22. - 08/25/06
! 5-Mar-08 11:10
use out.nc
!set region/z=-120:0
set memory/size=200
set window/aspect=0.5/size=200
ppl dfltfnt sr
ppl axlsze 0.18 0.18
! Symbols
define symbol ns91=7.81 ! W m-2 (Nelson and Smith 1991)
! ======================================================================
! Zone photique
let light_fraction = par/par[k=50]
let photic = light_fraction[z=@loc:0.01]
fill/nolabel/key=continuous/palette=rnb3/level=(10,100,5)(inf)/k=21:50 par; frame/file=par.gif
define axis/t="1-jan-2009":"28-jun-2009":24/units=hours thours
fill/nolabel/key=continuous/palette=rnb3/level=(10,100,5)(inf)/k=21:50 par[l=@sbx:72]; frame/file=par_sbx.gif
! Sverdrup Critical Depth
let light_int = par[l=@sbx:72]
let zc = light_int[k=@loc:($ns91)]
let zt = zsbl[l=@sbx:72]
let ztzc_ratio = zt/zc
plot zc
frame/file=zc.gif
plot zt
frame/file=zt.gif
let phy = dia + fla
let zoo = msz + mcz
let totaln = phy + bac + det + zoo + nit + amm + ldn
! Schloss et al. (2014)
set viewport upper
go margins 1.0 0.0 1.5 1.5
ppl axlint 0 5
define axis/t="1-jan-2009":"28-jun-2009":24/units=hours thours
fill/nolabel/key=continuous/palette=rnb2 num[gt=thours]
plot/over/nolabel/thick=2/axes=0,0,1,1 zt
set viewport lower
go margins 0 1.0 1.5 1.5
ppl axlint 1 5
fill/nolabel/key=continuous/palette=no_red/level=(0.1,2,0.1)(inf)/vlimits=-40:0/axes=0,1,1,1 phy
frame/file=zt_phy.gif
cancel viewport
set viewport upper
go margins 1.0 0.0 1.5 1.5
ppl axlint 0 5
plot/nolabel/thick=2/axes=0,0,1,1/vlimits=0:3 ztzc_ratio
set viewport lower
go margins 0 1.0 1.5 1.5
ppl axlint 1 5
fill/nolabel/key=continuous/palette=no_red/level=(0.1,2,0.1)(inf)/vlimits=-40:0/axes=0,1,1,1 phy
frame/file=ztzc.gif
cancel viewport
! Nitrate et nitracline
let d_nit=nit[k=1:80@ddc]
let nitracline=d_nit[k=1:50@loc:-0.02]
fill/nolabel/key=continuous/palette=no_green_centered nit; frame/file=nit.gif
plot nitracline; frame/file=nitracline.gif
! Maximum de chlorophylle
let phymax = phy[k=@max]
let zero_at_phymax = phy - phymax
let depth_of_phymax = zero_at_phymax[z=@loc:0]
let depth_of_phymax = if (phymax gt 0.1) then zero_at_phymax[z=@loc:0] else 999
set variable/bad=999 depth_of_phymax
! Phytoplancton
define axis/t="1-jan-2009":"28-jun-2009":24/units=hours thours
fill/nolabel/key=continuous/palette=no_red/level=(0.1,2,0.1)(inf) phy[gt=thours]
plot/over nitracline
plot/over photic
frame/file=phy.gif
plot/nolabel/thick=2/vlimits=-120:0 depth_of_phymax
plot/over/dash/color=black/thick=2 photic
frame/file=phymax.gif
! PON cycle
!ppl axlint 1 5
!plot/thick=2/vlimits=0:30/nolabel phy[k=1:80@din]
!plot/over/thick=2/dash=(0.1,0.1,0.1,0.1)/color=black bac[k=1:80@din]
!plot/over/thick=2/dash=(0.3,0.1,0.1,0.1)/color=black zoo[k=1:80@din]
!plot/over/thick=2 det[k=1:80@din]
!frame/file=pon_cycle.gif
! DN cycle
!plot/thick=2/nolabel totaln[k=1:80@din]
!plot/over/thick=2/dash=(0.1,0.1,0.1,0.1)/color=black nit[k=1:80@din]
!plot/over/thick=2/dash=(0.3,0.1,0.1,0.1)/color=black amm[k=1:80@din]
!plot/over/thick=2/dash=(0.3,0.1,0.3,0.1)/color=black ldn[k=1:80@din]
!frame/file=dn_cycle.gif
! Autres compartiments
fill/nolabel/pal=orange_red/key=continuous zoo; frame/file=zoo.gif
fill/nolabel/pal=red_purple/key=continuous bac; frame/file=bac.gif
fill/nolabel/key=continuous/pal=no_green_centered amm; frame/file=amm.gif
fill/nolabel/key=continuous/pal=reds_cmyk ldn; frame/file=ldn.gif
fill/nolabel/key=continuous/pal=orange_brown det; frame/file=det.gif
! ======================================================================
! Hydrographie
fill/nolabel/key=continuous/palette=rnb3/level=(-inf)(30,34,0.2)(inf) salt; contour/over/size=0.12/level=(30,34,0.2) salt
frame/file=salt.gif
fill/nolabel/key=continuous/palette=ocean_temp temp; contour/over/size=0.12 temp
frame/file=temp.gif
!plot sst; frame/file=sst.gif
!plot sss; frame/file=sss.gif
! Radiation
plot/nolabel/thick=2 swr; frame/file=swr.gif
!plot int_swr; frame/file=int_swr.gif
! Chaleur
plot/nolabel/thick=2/title="Surface heat flux (W/m^2)" heat; frame/file=heat.gif
!plot int_heat; frame/file=int_heat.gif
! Vent
let taus = (x_taus^2 + y_taus^2)^0.5
set variable/unit="Pa"/title="surface wind stress" taus
set viewport upper
go margins 1.0 0.0 1.5 1.5
ppl axlint 0 5
plot/nolabel/thick=2/axes=0,0,1,1 taus
set viewport lower
go margins 0 1.0 1.5 1.5
ppl axlint 1 5
fill/nolabel/key=continuous/palette=rnb3/vlimits=-40:0/axes=0,1,1,1 num
frame/file=taus_num.gif
cancel viewport
set viewport upper
go margins 1.0 0.0 1.5 1.5
ppl axlint 0 5
plot/nolabel/thick=2/axes=0,0,1,1 taus
set viewport lower
go margins 0 1.0 1.5 1.5
ppl axlint 1 5
plot/nolabel/thick=2/axes=0,1,1,1/vlimits=-40:0 zsbl
frame/file=taus_zsbl.gif
cancel viewport
set viewport upper
go margins 1.0 0.0 1.5 1.5
ppl axlint 0 5
fill/nolabel/key=continuous/pal=warm_cmyk (u^2+v^2)^0.5
set viewport lower
go margins 0 1.0 1.5 1.5
ppl axlint 1 5
fill/nolabel/key=continuous/pal=rnb2/axes=0,1,1,1/vlimits=-100:-60/lev=(-5,-2,0.05)(inf) log(num)
frame/file=u_num_bot.gif
cancel viewport
! Turbulence
!fill/nolabel u; frame/file=u.gif
!fill/nolabel v; frame/file=v.gif
!fill/nolabel uu; frame/file=uu.gif
!fill/nolabel vv; frame/file=vv.gif
!fill/nolabel ww; frame/file=ww.gif
!fill/nolabel p; frame/file=p.gif
!fill/nolabel tke; frame/file=tke.gif
!fill/nolabel eps; frame/file=eps.gif
plot/nolabel/thick=2/vlimits=-60:0 zsbl; frame/file=zsbl.gif
!plot/nolabel zbbl; frame/file=zbbl.gif
! Non-local fluxes
!fill/nolabel/key=continuous/palette=redscale gamh; frame/file=gamh.gif
!fill/nolabel/key=continuous/palette=redscale gams; frame/file=gams.gif
!fill/nolabel/key=continuous/palette=redscale gamu; frame/file=gamu.gif
!fill/nolabel/key=continuous/palette=redscale gamv; frame/file=gamv.gif
! ======================================================================
! Résolution verticale
set window/aspect=1.8
plot/nolabel/l=1/symbol=27/thick=2/size=0.15 h; frame/file=h.gif
exit
ghent/30m/fig_bio_ismer.jnl 0 → 100644
View file @ ed3ed5c0
! NOAA/PMEL TMAP
! FERRET v6
! Linux(g77) 2.6.9-22. - 08/25/06
! 5-Mar-08 11:10
use out.nc
!set region/z=-120:0
set memory/size=200
set window/aspect=0.5/size=200
ppl dfltfnt sr
ppl axlsze 0.18 0.18
! Symbols
define symbol ns91=7.81 ! W m-2 (Nelson and Smith 1991)
! ======================================================================
! Zone photique
let light_fraction = par/par[k=30]
let photic = light_fraction[z=@loc:0.01]
fill/nolabel/key=continuous/palette=rnb3/level=(10,100,5)(inf) par; frame/file=par.gif
define axis/t="1-jan-2009":"28-jun-2009":24/units=hours thours
fill/nolabel/key=continuous/palette=rnb3/level=(10,100,5)(inf) par[l=@sbx:72]; frame/file=par_sbx.gif
! Sverdrup Critical Depth
let light_int = par[l=@sbx:72]
let zc = light_int[k=@loc:($ns91)]
let zt = zsbl[l=@sbx:72]
let ztzc_ratio = zt/zc
plot zc
frame/file=zc.gif
plot zt
frame/file=zt.gif
let phy = dia + fla
let zoo = msz + mcz
let totaln = phy + bac + det + zoo + nit + amm + ldn
! Schloss et al. (2014)
set viewport upper
go margins 1.0 0.0 1.5 1.5
ppl axlint 0 5
define axis/t="1-jan-2009":"28-jun-2009":24/units=hours thours
fill/nolabel/key=continuous/palette=rnb2 num[gt=thours]
plot/over/nolabel/thick=2/axes=0,0,1,1 zt
set viewport lower
go margins 0 1.0 1.5 1.5
ppl axlint 1 5
fill/nolabel/key=continuous/palette=no_red/level=(0.1,2,0.1)(inf)/vlimits=-30:0/axes=0,1,1,1 phy
frame/file=zt_phy.gif
cancel viewport
set viewport upper
go margins 1.0 0.0 1.5 1.5
ppl axlint 0 5
plot/over/nolabel/thick=2/axes=0,0,1,1/vlimits=0:3 ztzc_ratio
set viewport lower
go margins 0 1.0 1.5 1.5
ppl axlint 1 5
fill/nolabel/key=continuous/palette=no_red/level=(0.1,2,0.1)(inf)/vlimits=-30:0/axes=0,1,1,1 phy
frame/file=ztzc.gif
cancel viewport
! Nitrate et nitracline
let d_nit=nit[k=@ddc]
let nitracline=d_nit[k=@loc:-0.02]
fill/nolabel/key=continuous/palette=no_green_centered nit; frame/file=nit.gif
plot nitracline; frame/file=nitracline.gif
! Maximum de chlorophylle
let phymax = phy[k=@max]
let zero_at_phymax = phy - phymax
let depth_of_phymax = zero_at_phymax[z=@loc:0]
let depth_of_phymax = if (phymax gt 0.1) then zero_at_phymax[z=@loc:0] else 999
set variable/bad=999 depth_of_phymax
! Phytoplancton
define axis/t="1-jan-2009":"28-jun-2009":24/units=hours thours
fill/nolabel/key=continuous/palette=no_red/level=(0.1,2,0.1)(inf) phy[gt=thours]
plot/over nitracline
plot/over photic
frame/file=phy.gif
exit
plot/nolabel/thick=2 depth_of_phymax
plot/over/dash/color=black/thick=2 photic
frame/file=phymax.gif
! PON cycle
ppl axlint 1 5
plot/thick=2/vlimits=0:30/nolabel phy[k=@din]
plot/over/thick=2/dash=(0.1,0.1,0.1,0.1)/color=black bac[k=@din]
plot/over/thick=2/dash=(0.3,0.1,0.1,0.1)/color=black zoo[k=@din]
!plot/over/thick=2 det[k=@din]
frame/file=pon_cycle.gif
! DN cycle
plot/thick=2/nolabel totaln[k=@din]
plot/over/thick=2/dash=(0.1,0.1,0.1,0.1)/color=black nit[k=@din]
plot/over/thick=2/dash=(0.3,0.1,0.1,0.1)/color=black amm[k=@din]
plot/over/thick=2/dash=(0.3,0.1,0.3,0.1)/color=black ldn[k=@din]
frame/file=dn_cycle.gif
! Autres compartiments
fill/nolabel/pal=orange_red/key=continuous zoo; frame/file=zoo.gif
fill/nolabel/key=continuous bac; frame/file=bac.gif
fill/nolabel/key=continuous/palette=no_green_centered amm; frame/file=amm.gif
fill/nolabel/key=continuous ldn; frame/file=ldn.gif
fill/nolabel/key=continuous/pal=orange_brown det; frame/file=det.gif
! ======================================================================
! Hydrographie
fill/nolabel/key=continuous/palette=rnb3/level=(-inf)(30,34,0.2)(inf) salt; contour/over/size=0.12/level=(30,34,0.2) salt
frame/file=salt.gif
fill/nolabel/key=continuous/palette=ocean_temp temp; contour/over/size=0.12 temp
frame/file=temp.gif
!plot sst; frame/file=sst.gif
!plot sss; frame/file=sss.gif
! Radiation
plot/nolabel/thick=2 swr; frame/file=swr.gif
!plot int_swr; frame/file=int_swr.gif
! Chaleur
plot/nolabel/thick=2/title="Surface heat flux (W/m^2)" heat; frame/file=heat.gif
!plot int_heat; frame/file=int_heat.gif
! Vent
let taus = (x_taus^2 + y_taus^2)^0.5
set variable/unit="Pa"/title="surface wind stress" taus
set viewport upper
go margins 1.0 0.0 1.5 1.5
ppl axlint 0 5
plot/nolabel/thick=2/axes=0,0,1,1 taus
set viewport lower
go margins 0 1.0 1.5 1.5
ppl axlint 1 5
fill/nolabel/key=continuous/palette=rnb3/vlimits=-20:0/axes=0,1,1,1 num
frame/file=taus_num.gif
cancel viewport
set viewport upper
go margins 1.0 0.0 1.5 1.5
ppl axlint 0 5
plot/nolabel/thick=2/axes=0,0,1,1 taus
set viewport lower
go margins 0 1.0 1.5 1.5
ppl axlint 1 5
plot/nolabel/thick=2/axes=0,1,1,1/vlimits=-40:0 zsbl
frame/file=taus_zsbl.gif
cancel viewport
set viewport upper
go margins 1.0 0.0 1.5 1.5
ppl axlint 0 5
fill/nolabel/key=continuous/pal=warm_cmyk (u^2+v^2)^0.5
set viewport lower
go margins 0 1.0 1.5 1.5
ppl axlint 1 5
fill/nolabel/key=continuous/pal=rnb2/axes=0,1,1,1/vlimits=-100:-60/lev=(-5,-2,0.05)(inf) log(num)
frame/file=u_num_bot.gif
cancel viewport
! Turbulence
!fill/nolabel u; frame/file=u.gif
!fill/nolabel v; frame/file=v.gif
!fill/nolabel uu; frame/file=uu.gif
!fill/nolabel vv; frame/file=vv.gif
!fill/nolabel ww; frame/file=ww.gif
!fill/nolabel p; frame/file=p.gif
!fill/nolabel tke; frame/file=tke.gif
!fill/nolabel eps; frame/file=eps.gif
plot/nolabel/thick=2/vlimits=-60:0 zsbl; frame/file=zsbl.gif
!plot/nolabel zbbl; frame/file=zbbl.gif
! Non-local fluxes
!fill/nolabel/key=continuous/palette=redscale gamh; frame/file=gamh.gif
!fill/nolabel/key=continuous/palette=redscale gams; frame/file=gams.gif
!fill/nolabel/key=continuous/palette=redscale gamu; frame/file=gamu.gif
!fill/nolabel/key=continuous/palette=redscale gamv; frame/file=gamv.gif
! ======================================================================
! Résolution verticale
set window/aspect=1.8
plot/nolabel/l=1/symbol=27/thick=2/size=0.15 h; frame/file=h.gif
exit
ghent/airsea.nml 0 → 100644
View file @ ed3ed5c0
!$Id: airsea.proto,v 1.1.1.1 2003/03/11 13:38:58 kbk Exp $
!-------------------------------------------------------------------------------
!
!-------------------------------------------------------------------------------
! air-sea interaction (heat, momentum and freshwater fluxes and solar radiation)
!
! calc_fluxes -> surface fluxes calculated by means of bulk formulae
! (.true./.false.). Solar radiation is calculated from
! time, latitude, longitude and clouds. If (.true.),
! meteo_file must be given and wet_mode must be specified.
! If (.false.), surface fluxes and solar radiation are
! prescribed.
!
! meteo_file -> file with meteo data (for calc_fluxes=.true.) with
! - date (yyyy-mm-dd hh:mm:ss)
! - x-comp. of wind (10 m) in m/s
! - y-comp. of wind (10 m) in m/s
! - air pressure ( 2 m) in hectopascal
! - dry air temp. ( 2 m) in Celsius
! - relative humidity in % or wet bulb temperature in C
! or dew point temperature in C (depending on wet_mode)
! - cloud cover in 1/10
!
! wet_mode -> decides what is given in 7. column in meteo_file
! 1: relative humidity
! 2: wet bulb temperature
! 3: dew point temperature
!
! heat_method -> method to provide short wave radiation (swr) and
! surface heat flux (qh)
! (only for calc_fluxes=.false.)
! 0: heat flux not prescribed
! 1: constant "const_swr" and "const_qh" given (see below)
! 2: swr and qh are read from heatflux_file
! const_swr -> constant value of incoming short wave radiation in W/m^2
! (always positive)
!
! const_qh -> constant value of surface heat flux in W/m^2
! (negative for heat loss)
!
! heatflux_file -> file with qin and qout given in W/m^2
! (negative for net outgoing)
!
! momentum_method -> method how momentum fluxes are given
! (only for calc_fluxes=.false.)
! 0: momentum flux not prescribed
! 1: constant surface momentum fluxes given
! 2: surface momentum fluxes given from file momentumflux_file
!
! const_tx -> x-component of surface momentum flux in N/m^2
! const_ty -> y-component of surface momentum flux in N/m^2
!
! momentumflux_file-> file with tx and ty given in N/m^2
!
! p_e_method -> method how fresh water fluxes (P-E) are given
! 0: P-E not used
! 1: constant value for P-E (in m/s) used
! (P-E = precipitation-evaporation)
! 2: values for P-E read from file
!
! const_p_e -> constant value for P-E in m/s (positive for P>E)
!
! p_e_flux_file -> file with value for P-E (positive for P>E)
! used if p_e_method=2
!
! sst_method -> method how sea surface temperature (SST) is given
! 0: no independent SST observation is read from file
! 2: independent SST observation is read from file,
! only for output
!
! sst_file -> file with independent SST observation
!
! sss_method -> method how sea surface salinity (SSS) is given
! 0: no independent SSS observation is read from file
! 2: independent SSS observation is read from file,
! only for output
!-------------------------------------------------------------------------------
&airsea
calc_fluxes= .true.
meteo_file= 'meteo.dat'
wet_mode= 1
heat_method= 0
const_swr= 200.0
const_heat= 0.0
heatflux_file= 'heatflux.dat'
momentum_method= 1
const_tx= 0.1
const_ty= 0.0
momentumflux_file='momentumflux.dat'
p_e_method= 0
const_p_e= 0.
p_e_flux_file= 'p_e.dat'
sst_method= 0
sst_file= 'sst.dat'
sss_method= 0
sss_file= 'sss.dat'
/
ghent/anim.jnl 0 → 100644
View file @ ed3ed5c0
! NOAA/PMEL TMAP
! FERRET v6
! Linux(g77) 2.6.9-22. - 08/25/06
! 5-Mar-08 11:10
use out.nc
set region/l=1:24
set memory/size=200
set window/aspect=0.5/size=2000
ppl dfltfnt sr
ppl axlsze 0.18 0.18
! Physique
define viewport/ylim=0,1/xlim=0.00,0.17 v1
define viewport/ylim=0,1/xlim=0.17,0.33 v2
define viewport/ylim=0,1/xlim=0.33,0.50 v3
define viewport/ylim=0,1/xlim=0.50,0.66 v4
define viewport/ylim=0,1/xlim=0.66,0.83 v5
define viewport/ylim=0,1/xlim=0.83,1.00 v6
set viewport v1
go margins 0.5 0.5 0.2 0.2
!ppl axlint 1 2
!ppl axatic 0 11
fill/nolabel/nokey/axes=1,1,0,0/title=""/pal=rnb3 par
set viewport v2
go margins 0.5 0.5 0.2 0.2
!ppl axlint 1 8
!ppl color 2 70 70 70
fill/nolabel/nokey/axes=1,1,0,0/title=""/pal=no_green_centered nit
label/nouser -1, 0.5, 0, 90, 0.24, W m^-^2
set viewport v3
go margins 0.5 0.5 0.2 0.2
!ppl axlint 1 2
!ppl axatic 0 11
let phy = dia + fla
fill/nolabel/nokey/axes=1,1,0,0/title=""/level=(0.2,1,0.1)(inf)/pal=no_red phy
set viewport v4
go margins 0.5 0.5 0.2 0.2
!ppl axlint 1 4
let zoo = mcz + msz
fill/nolabel/nokey/axes=1,1,0,0/pal=orange_red zoo
!label/nouser -1, 0.5, 0, 90, 0.24, m^2 s^-^2
set viewport v5
go margins 0.5 0.5 0.2 0.2
!ppl axlint 0 4
fill/nolabel/nokey/axes=1,1,0,0/pal=orange_brown det