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Depot du modele / Model deposit

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GNU GENERAL PUBLIC LICENSE
Version 2, June 1991
Copyright (C) 1989, 1991 Free Software Foundation, Inc.
59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Everyone is permitted to copy and distribute verbatim copies
of this license document, but changing it is not allowed.
Preamble
The licenses for most software are designed to take away your
freedom to share and change it. By contrast, the GNU General Public
License is intended to guarantee your freedom to share and change free
software--to make sure the software is free for all its users. This
General Public License applies to most of the Free Software
Foundation's software and to any other program whose authors commit to
using it. (Some other Free Software Foundation software is covered by
the GNU Library General Public License instead.) You can apply it to
your programs, too.
When we speak of free software, we are referring to freedom, not
price. Our General Public Licenses are designed to make sure that you
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in new free programs; and that you know you can do these things.
To protect your rights, we need to make restrictions that forbid
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We protect your rights with two steps: (1) copyright the software, and
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The precise terms and conditions for copying, distribution and
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GNU GENERAL PUBLIC LICENSE
TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
0. This License applies to any program or other work which contains
a notice placed by the copyright holder saying it may be distributed
under the terms of this General Public License. The "Program", below,
refers to any such program or work, and a "work based on the Program"
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that is to say, a work containing the Program or a portion of it,
either verbatim or with modifications and/or translated into another
language. (Hereinafter, translation is included without limitation in
the term "modification".) Each licensee is addressed as "you".
Activities other than copying, distribution and modification are not
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running the Program is not restricted, and the output from the Program
is covered only if its contents constitute a work based on the
Program (independent of having been made by running the Program).
Whether that is true depends on what the Program does.
1. You may copy and distribute verbatim copies of the Program's
source code as you receive it, in any medium, provided that you
conspicuously and appropriately publish on each copy an appropriate
copyright notice and disclaimer of warranty; keep intact all the
notices that refer to this License and to the absence of any warranty;
and give any other recipients of the Program a copy of this License
along with the Program.
You may charge a fee for the physical act of transferring a copy, and
you may at your option offer warranty protection in exchange for a fee.
2. You may modify your copy or copies of the Program or any portion
of it, thus forming a work based on the Program, and copy and
distribute such modifications or work under the terms of Section 1
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a) You must cause the modified files to carry prominent notices
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whole or in part contains or is derived from the Program or any
part thereof, to be licensed as a whole at no charge to all third
parties under the terms of this License.
c) If the modified program normally reads commands interactively
when run, you must cause it, when started running for such
interactive use in the most ordinary way, to print or display an
announcement including an appropriate copyright notice and a
notice that there is no warranty (or else, saying that you provide
a warranty) and that users may redistribute the program under
these conditions, and telling the user how to view a copy of this
License. (Exception: if the Program itself is interactive but
does not normally print such an announcement, your work based on
the Program is not required to print an announcement.)
These requirements apply to the modified work as a whole. If
identifiable sections of that work are not derived from the Program,
and can be reasonably considered independent and separate works in
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distribute the same sections as part of a whole which is a work based
on the Program, the distribution of the whole must be on the terms of
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Thus, it is not the intent of this section to claim rights or contest
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In addition, mere aggregation of another work not based on the Program
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except as expressly provided under this License. Any attempt
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license would not permit royalty-free redistribution of the Program by
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integrity of the free software distribution system, which is
implemented by public license practices. Many people have made
generous contributions to the wide range of software distributed
through that system in reliance on consistent application of that
system; it is up to the author/donor to decide if he or she is willing
to distribute software through any other system and a licensee cannot
impose that choice.
This section is intended to make thoroughly clear what is believed to
be a consequence of the rest of this License.
8. If the distribution and/or use of the Program is restricted in
certain countries either by patents or by copyrighted interfaces, the
original copyright holder who places the Program under this License
may add an explicit geographical distribution limitation excluding
those countries, so that distribution is permitted only in or among
countries not thus excluded. In such case, this License incorporates
the limitation as if written in the body of this License.
9. The Free Software Foundation may publish revised and/or new versions
of the General Public License from time to time. Such new versions will
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Each version is given a distinguishing version number. If the Program
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either of that version or of any later version published by the Free
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10. If you wish to incorporate parts of the Program into other free
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NO WARRANTY
11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY
FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN
OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES
PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED
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REPAIR OR CORRECTION.
12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR
REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES,
INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING
OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED
TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY
YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER
PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE
POSSIBILITY OF SUCH DAMAGES.
END OF TERMS AND CONDITIONS
How to Apply These Terms to Your New Programs
If you develop a new program, and you want it to be of the greatest
possible use to the public, the best way to achieve this is to make it
free software which everyone can redistribute and change under these terms.
To do so, attach the following notices to the program. It is safest
to attach them to the start of each source file to most effectively
convey the exclusion of warranty; and each file should have at least
the "copyright" line and a pointer to where the full notice is found.
<one line to give the program's name and a brief idea of what it does.>
Copyright (C) 19yy <name of author>
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
Also add information on how to contact you by electronic and paper mail.
If the program is interactive, make it output a short notice like this
when it starts in an interactive mode:
Gnomovision version 69, Copyright (C) 19yy name of author
Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
This is free software, and you are welcome to redistribute it
under certain conditions; type `show c' for details.
The hypothetical commands `show w' and `show c' should show the appropriate
parts of the General Public License. Of course, the commands you use may
be called something other than `show w' and `show c'; they could even be
mouse-clicks or menu items--whatever suits your program.
You should also get your employer (if you work as a programmer) or your
school, if any, to sign a "copyright disclaimer" for the program, if
necessary. Here is a sample; alter the names:
Yoyodyne, Inc., hereby disclaims all copyright interest in the program
`Gnomovision' (which makes passes at compilers) written by James Hacker.
<signature of Ty Coon>, 1 April 1989
Ty Coon, President of Vice
This General Public License does not permit incorporating your program into
proprietary programs. If your program is a subroutine library, you may
consider it more useful to permit linking proprietary applications with the
library. If this is what you want to do, use the GNU Library General
Public License instead of this License.
HISTORY 0 → 100755
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Please read information and documentation on www.gotm.net
INSTALL 0 → 100755
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For the brave ones:
cd src; make
If you encounter errors during compilation please check the WWW-page:
http://www.gotm.net/
for further information and if that does not
help, e-mail users@gotm.net of the authors.
For testing we strongly recommaned downloading some of the prepared test caeses
from the above mentioned web-site.
Good luck, and remember to inform of further developments for inclusion,
exciting simulations etc.
The GOTM team.
Makefile 0 → 100755
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#$Id: Makefile,v 1.16 2007-04-18 10:29:18 kbk Exp $
#
# Makefile for making new release of GOTM.
#
# Before doing - make release - be sure to commit all files.
# Remember to update - VERSION - for each new release
# 20010531
VERSION=2.3.5
# 20010531
VERSION=2.3.6
# 20010613
VERSION=2.3.7
# 20011118
VERSION=2.3.8
# 20030327
VERSION=3.1.0
# 20050627
VERSION=3.1.3
# 20050627
VERSION=3.1.3_bio
# 20050817
VERSION=3.2.0
# 20050817
VERSION=3.3.0
# 20051117
VERSION=3.3.1
# 20051228
VERSION=3.3.2
# 20070418
VERSION=4.0.0
all: VERSION
VERSION: Makefile
$(MAKE) distclean
@echo $(VERSION) > $@
@date > timestamp
@echo \#define RELEASE \"$(VERSION)\" > .ver
@mv -f .ver include/version.h
Makefile:
exec: VERSION
make -C src
gui: VERSION
make -C gui.py
devel stable branch: VERSION
@echo
@echo "making a new "$@" release: v"$(VERSION)
@echo
@. release.sh $@ $(VERSION)
distclean:
make -C doc/ $@
make -C src/ $@
$(RM) timestep VERSION include/version.h
$(RM) -r lib/ modules/
#-----------------------------------------------------------------------
# Copyright (C) 2001 - Hans Burchard and Karsten Bolding (BBH) !
#-----------------------------------------------------------------------
README 0 → 100755
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See installation instructions on www.gotm.net
compilers/compiler.DECFOR 0 → 100755
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# Set options for the Compaq fort compiler - on alphas.
ifeq ($(FORTRAN_COMPILER),DECFOR)
FC=f90
DEFINES += -DFORTRAN95
can_do_F90=false
can_do_F90=true
MODULES=-module $(MODDIR)
EXTRAS =
DEBUG_FLAGS = -g -arch host -check bounds -check overflow -check nopower -check underflow -std90 -assume gfullpath
DEBUG_FLAGS = -g -arch host -check bounds -check overflow -check nopower -assume gfullpath
PROF_FLAGS = -pg -O
PROD_FLAGS = -O -fast -inline speed -pipeline
#PROD_FLAGS = -O -fast -inline speed -unroll 1 -pipeline
DEFINES += -DREAL_4B=real\(4\)
endif
compilers/compiler.FUJITSU 0 → 100755
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# Set options for the Fujitsu compiler - on Linux/Intel and SunOS.
ifeq ($(FORTRAN_COMPILER),FUJITSU)
FC=frt
can_do_F90=true
DEFINES += -DFORTRAN95
MODULES=-Am -M$(MODDIR)
EXTRAS = -ml=cdecl -fw
EXTRAS = -fw
DEBUG_FLAGS = -g -H aeus
PROF_FLAGS = -pg -O3
PROD_FLAGS = -O -K fast
DEFINES += -DREAL_4B=real\(4\)
endif
compilers/compiler.G95 0 → 100755
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# Set options for the GNU Fortran 95 compiler
ifeq ($(FORTRAN_COMPILER),G95)
FC = g95
DEFINES += -DFORTRAN90
can_do_F90 = true
F90_to_f90 =
MODULES = -M $(MODDIR)
EXTRAS = -ffree-form -Wall -std=f95 -pedantic
DEBUG_FLAGS = -g
PROF_FLAGS = -p
PROD_FLAGS = -O3
DEFINES += -DREAL_4B=real\(4\)
NETCDFINC = /opt/local/include
NETCDFLIBDIR = /opt/local/lib
endif
compilers/compiler.GFORTRAN 0 → 100755
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# Set options for the GNU Fortran 95 compiler
ifeq ($(FORTRAN_COMPILER),GFORTRAN)
FC=gfortran
DEFINES += -DFORTRAN95
can_do_F90 = true
F90_to_f90 = $(FC) -E $(F90FLAGS) $(EXTRA_FFLAGS) $< > $@
#MODULES = -M $(MODDIR)
MODULES = -J $(MODDIR)
EXTRAS = -ffree-form -Wall -std=f95 -pedantic
DEBUG_FLAGS = -g
PROF_FLAGS = -p
PROD_FLAGS = -O0
DEFINES += -DREAL_4B=real\(4\)
NETCDFINC = /opt/local/netcdf-3.6.1/include
NETCDFLIBDIR = /opt/local/netcdf-3.6.1/lib
endif
compilers/compiler.IFC 0 → 100755
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# Set options for the Intel Fortran 95 compiler.
ifeq ($(FORTRAN_COMPILER),IFC)
FC=ifc
DEFINES += -DFORTRAN95
can_do_F90=true
F90_to_f90=$(FC) -E $(F90FLAGS) $(EXTRA_FFLAGS) $< > $@
F90_to_f90=
MODULES=
MODULES=-module $(MODDIR)
EXTRAS = -w95 -e95 -static
DEBUG_FLAGS = -g -C
PROF_FLAGS = -qp -p
PROD_FLAGS = -O3
DEFINES += -DREAL_4B=real\(4\)
EXTRA_LIBS += -lPEPCF90 -lpthread
endif
compilers/compiler.IFORT 0 → 100755
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# Set options for the Intel Fortran 95 compiler - ver. 8.
ifeq ($(FORTRAN_COMPILER),IFORT)
FC=ifort
DEFINES += -DFORTRAN95
can_do_F90=true
F90_to_f90=
MODULES=
MODULES=-module $(MODDIR)
EXTRAS = -w95 -e95
EXTRAS = -w95
DEBUG_FLAGS = -g -C
PROF_FLAGS = -qp -p
PROD_FLAGS = -O3
DEFINES += -DREAL_4B=real\(4\)
endif
compilers/compiler.NAG 0 → 100755
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# Set options for the NAG Fortran compiler.
ifeq ($(FORTRAN_COMPILER),NAG)
FC=f95nag
DEFINES += -DFORTRAN95
can_do_F90=true
MODULES=-mdir $(MODDIR)
EXTRAS = -f77
DEBUG_FLAGS = -g -C=all -O0
PROF_FLAGS = -pg -O3
PROD_FLAGS = -O3
DEFINES += -DREAL_4B=real\(4\)
endif
compilers/compiler.PGF90 0 → 100755
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# Set options for the Portland Group Fortran 90 compiler.
ifeq ($(FORTRAN_COMPILER),PGF90)
FC = pgf90
DEFINES += -DFORTRAN90
#can_do_F90 = false
can_do_F90 = true
F90_to_f90 = $(FC) -E $(F90FLAGS) $(EXTRA_FFLAGS) $< > $@
MODULES = -module $(MODDIR)
EXTRAS =
DEBUG_FLAGS = -g -Ktrap=fp -Mbounds
PROF_FLAGS = -Mprof=func
PROD_FLAGS = -O0 -r8 -i4 -byteswapio
DEFINES += -DREAL_4B=real\(4\)
NETCDFINC = /usr/local/netcdf-3.6.1/include
NETCDFLIBDIR = /usr/local/netcdf-3.6.1/lib
endif
compilers/compiler.XLF 0 → 100755
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# Set options for "xlf90" compiler on AIX systems
ifeq ($(FORTRAN_COMPILER),XLF)
FC=xlf90_r
DEFINES += -DFORTRAN95
can_do_F90=true
F90_to_f90=
MODULES=-qmoddir=$(MODDIR)
EXTRAS = -q32 -qsuffix=f=f90:cpp=F90
DEBUG_FLAGS = -d -g -qcheck
PROF_FLAGS = -g -pg
PROD_FLAGS = -O3 -qstrict
DEFINES += -DREAL_4B=real\(4\)
DEFINES:=-WF,"$(DEFINES)"
endif
doc/Makefile 0 → 100644
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#$Id: Makefile,v 1.13 2007-04-18 07:11:11 kbk Exp $
#
# Makefile for making the source code documentation.
#
SHELL = /bin/sh
SRCDIR = ../src
PROTEXSRC = gotm.tex \
meanflow.tex \
turbulence.tex \
airsea.tex \
observations.tex \
output.tex \
util.tex \
seagrass.tex \
bio.tex
TEXSRC = introduction.tex \
mainIntro.tex \
meanflowIntro.tex \
turbulenceIntro.tex \
airseaIntro.tex \
observationsIntro.tex \
outputIntro.tex \
utilIntro.tex \
extraIntro.tex \
cases.tex \
gotm.bib
TEXHTMLSRC = introduction.tex \
mainIntro.tex \
meanflowIntroHTML.tex \
turbulenceIntro.tex \
airseaIntro.tex \
observationsIntro.tex \
outputIntro.tex \
utilIntroHTML.tex \
extraIntro.tex \
cases.tex \
gotm.bib
.PHONY : all clean realclean distclean protex \
a4_dvi letter_dvi html_dvi \
a4_ps letter_ps html_ps \
a4_pdf letter_pdf html_pdf \
html_web
all: a4_pdf letter_pdf html_pdf html_web
# do the pdf-versions
a4_pdf: protex a4.pdf
letter_pdf: protex letter.pdf
html_pdf: protex html.pdf