Depot du modele / Model deposit

HISTORY

+Please read information and documentation on www.gotm.net
+

INSTALL

+For the brave ones:
+cd src; make
+
+If you encounter errors during compilation please check the WWW-page:
+http://www.gotm.net/
+for further information and if that does not 
+help, e-mail users@gotm.net of the authors.
+
+For testing we strongly recommaned downloading some of the prepared test caeses
+from the above mentioned web-site.
+
+Good luck, and remember to inform of further developments for inclusion, 
+exciting simulations etc.
+
+The GOTM team.

Makefile

+#$Id: Makefile,v 1.16 2007-04-18 10:29:18 kbk Exp $
+#
+# Makefile for making new release of GOTM.
+#
+# Before doing - make release - be sure to commit all files.
+
+# Remember to update  - VERSION - for each new release
+
+
+# 20010531
+VERSION=2.3.5
+# 20010531
+VERSION=2.3.6
+# 20010613
+VERSION=2.3.7
+# 20011118
+VERSION=2.3.8
+# 20030327
+VERSION=3.1.0
+# 20050627
+VERSION=3.1.3
+# 20050627
+VERSION=3.1.3_bio
+# 20050817
+VERSION=3.2.0
+# 20050817
+VERSION=3.3.0
+# 20051117
+VERSION=3.3.1
+# 20051228
+VERSION=3.3.2
+# 20070418
+VERSION=4.0.0
+
+all: VERSION
+
+VERSION: Makefile
+	$(MAKE) distclean
+	@echo $(VERSION) > $@
+	@date > timestamp
+	@echo \#define RELEASE \"$(VERSION)\" > .ver
+	@mv -f .ver include/version.h
+
+Makefile:
+
+exec: VERSION
+	make -C src
+
+gui: VERSION
+	make -C gui.py
+
+devel stable branch: VERSION
+	@echo
+	@echo "making a new "$@" release: v"$(VERSION)
+	@echo
+	@. release.sh $@ $(VERSION)
+
+distclean:
+	make -C doc/ $@
+	make -C src/ $@
+	$(RM) timestep VERSION include/version.h
+	$(RM) -r lib/ modules/
+
+#-----------------------------------------------------------------------
+# Copyright (C) 2001 - Hans Burchard and Karsten Bolding (BBH)         !
+#-----------------------------------------------------------------------

README

+See installation instructions on www.gotm.net
+

VERSION

+4.0.0

compilers/compiler.DECFOR

+# Set options for the Compaq fort compiler - on alphas.
+ifeq ($(FORTRAN_COMPILER),DECFOR)
+FC=f90
+DEFINES += -DFORTRAN95
+can_do_F90=false
+can_do_F90=true
+MODULES=-module $(MODDIR)
+EXTRAS	=
+DEBUG_FLAGS = -g -arch host -check bounds -check overflow -check nopower -check underflow -std90 -assume gfullpath 
+DEBUG_FLAGS = -g -arch host -check bounds -check overflow -check nopower -assume gfullpath 
+PROF_FLAGS  = -pg -O
+PROD_FLAGS  = -O -fast -inline speed -pipeline
+#PROD_FLAGS  = -O -fast -inline speed -unroll  1 -pipeline
+DEFINES += -DREAL_4B=real\(4\)
+endif

compilers/compiler.FUJITSU

+# Set options for the Fujitsu compiler - on Linux/Intel and SunOS.
+ifeq ($(FORTRAN_COMPILER),FUJITSU)
+FC=frt
+can_do_F90=true
+DEFINES += -DFORTRAN95
+MODULES=-Am -M$(MODDIR)
+EXTRAS  = -ml=cdecl -fw
+EXTRAS  = -fw
+DEBUG_FLAGS = -g -H aeus
+PROF_FLAGS  = -pg -O3
+PROD_FLAGS  = -O -K fast
+DEFINES += -DREAL_4B=real\(4\)
+endif

compilers/compiler.G95

+# Set options for the GNU Fortran 95 compiler
+
+ifeq ($(FORTRAN_COMPILER),G95)
+
+FC           = g95
+DEFINES     += -DFORTRAN90
+can_do_F90   = true
+F90_to_f90   =
+MODULES      = -M $(MODDIR)
+EXTRAS       = -ffree-form -Wall -std=f95 -pedantic
+DEBUG_FLAGS  = -g 
+PROF_FLAGS   = -p
+PROD_FLAGS   = -O3
+DEFINES     += -DREAL_4B=real\(4\)
+NETCDFINC    = /opt/local/include
+NETCDFLIBDIR = /opt/local/lib
+
+endif

compilers/compiler.GFORTRAN

+# Set options for the GNU Fortran 95 compiler
+
+ifeq ($(FORTRAN_COMPILER),GFORTRAN)
+FC=gfortran
+
+DEFINES    += -DFORTRAN95
+can_do_F90  = true
+F90_to_f90  = $(FC) -E $(F90FLAGS) $(EXTRA_FFLAGS) $< > $@
+#MODULES    = -M $(MODDIR)
+MODULES     = -J $(MODDIR)
+EXTRAS      = -ffree-form -Wall -std=f95 -pedantic
+DEBUG_FLAGS = -g 
+PROF_FLAGS  = -p
+PROD_FLAGS  = -O0
+DEFINES    += -DREAL_4B=real\(4\)
+
+NETCDFINC    = /opt/local/netcdf-3.6.1/include
+NETCDFLIBDIR = /opt/local/netcdf-3.6.1/lib
+
+endif

compilers/compiler.IFC

+# Set options for the Intel Fortran 95 compiler.
+ifeq ($(FORTRAN_COMPILER),IFC)
+FC=ifc
+DEFINES += -DFORTRAN95
+can_do_F90=true
+F90_to_f90=$(FC) -E $(F90FLAGS) $(EXTRA_FFLAGS) $< > $@
+F90_to_f90=
+MODULES=
+MODULES=-module $(MODDIR)
+EXTRAS  = -w95 -e95 -static
+DEBUG_FLAGS = -g -C
+PROF_FLAGS  = -qp -p
+PROD_FLAGS  = -O3
+DEFINES += -DREAL_4B=real\(4\)
+EXTRA_LIBS += -lPEPCF90 -lpthread
+endif

compilers/compiler.IFORT

+# Set options for the Intel Fortran 95 compiler - ver. 8.
+ifeq ($(FORTRAN_COMPILER),IFORT)
+FC=ifort
+DEFINES += -DFORTRAN95
+can_do_F90=true
+F90_to_f90=
+MODULES=
+MODULES=-module $(MODDIR)
+EXTRAS  = -w95 -e95
+EXTRAS  = -w95
+DEBUG_FLAGS = -g -C
+PROF_FLAGS  = -qp -p
+PROD_FLAGS  = -O3
+DEFINES += -DREAL_4B=real\(4\)
+endif

compilers/compiler.NAG

+# Set options for the NAG Fortran compiler.
+ifeq ($(FORTRAN_COMPILER),NAG)
+FC=f95nag
+DEFINES += -DFORTRAN95
+can_do_F90=true
+MODULES=-mdir $(MODDIR)
+EXTRAS	= -f77
+DEBUG_FLAGS = -g -C=all -O0
+PROF_FLAGS  = -pg -O3
+PROD_FLAGS  = -O3
+DEFINES += -DREAL_4B=real\(4\)
+endif

compilers/compiler.PGF90

+# Set options for the Portland Group Fortran 90 compiler.
+
+ifeq ($(FORTRAN_COMPILER),PGF90)
+FC           = pgf90
+DEFINES     += -DFORTRAN90
+#can_do_F90  = false
+can_do_F90   = true
+F90_to_f90   = $(FC) -E $(F90FLAGS) $(EXTRA_FFLAGS) $< > $@
+MODULES      = -module $(MODDIR)
+EXTRAS       =
+DEBUG_FLAGS  = -g -Ktrap=fp -Mbounds
+PROF_FLAGS   = -Mprof=func
+PROD_FLAGS   = -O0 -r8 -i4 -byteswapio
+DEFINES     += -DREAL_4B=real\(4\)
+NETCDFINC    = /usr/local/netcdf-3.6.1/include
+NETCDFLIBDIR = /usr/local/netcdf-3.6.1/lib
+
+endif

compilers/compiler.XLF

+# Set options for "xlf90" compiler on AIX systems
+ifeq ($(FORTRAN_COMPILER),XLF)
+FC=xlf90_r
+DEFINES += -DFORTRAN95
+can_do_F90=true
+F90_to_f90=
+MODULES=-qmoddir=$(MODDIR)
+EXTRAS  = -q32 -qsuffix=f=f90:cpp=F90 
+DEBUG_FLAGS =  -d -g -qcheck
+PROF_FLAGS  = -g -pg 
+PROD_FLAGS  = -O3 -qstrict 
+DEFINES += -DREAL_4B=real\(4\)
+DEFINES:=-WF,"$(DEFINES)"
+endif

doc/Makefile

+#$Id: Makefile,v 1.13 2007-04-18 07:11:11 kbk Exp $
+#
+# Makefile for making the source code documentation. 
+#
+
+SHELL	   = /bin/sh
+
+SRCDIR    = ../src
+
+PROTEXSRC  = gotm.tex              \
+             meanflow.tex          \
+             turbulence.tex        \
+             airsea.tex            \
+             observations.tex      \
+             output.tex            \
+             util.tex              \
+             seagrass.tex          \
+             bio.tex
+
+TEXSRC     = introduction.tex      \
+             mainIntro.tex         \
+             meanflowIntro.tex     \
+             turbulenceIntro.tex   \
+             airseaIntro.tex       \
+             observationsIntro.tex \
+             outputIntro.tex       \
+             utilIntro.tex         \
+             extraIntro.tex        \
+             cases.tex             \
+             gotm.bib
+
+
+TEXHTMLSRC = introduction.tex      \
+             mainIntro.tex         \
+             meanflowIntroHTML.tex \
+             turbulenceIntro.tex   \
+             airseaIntro.tex       \
+             observationsIntro.tex \
+             outputIntro.tex       \
+             utilIntroHTML.tex     \
+             extraIntro.tex        \
+             cases.tex             \
+             gotm.bib
+
+
+
+.PHONY :     all clean realclean distclean protex \
+             a4_dvi letter_dvi html_dvi           \
+             a4_ps  letter_ps  html_ps            \
+             a4_pdf letter_pdf html_pdf           \
+             html_web
+
+
+all:         a4_pdf letter_pdf html_pdf html_web
+
+
+# do the pdf-versions
+a4_pdf:      protex a4.pdf
+
+letter_pdf:  protex letter.pdf
+
+html_pdf:    protex html.pdf
+
+# do the postscript-versions
+a4_ps:       protex a4.ps
+
+letter_ps:   protex letter.ps
+
+html_ps:     protex html.ps
+
+# do the dvi-versions
+a4_dvi:      protex a4.dvi
+
+letter_dvi:  protex letter.dvi
+
+html_dvi:    protex html.dvi
+
+# do the web-version
+html_web:    protex html
+
+protex:
+	$(MAKE) realclean -C $(SRCDIR)
+	$(MAKE) doc       -C $(SRCDIR)
+
+a4.dvi: a4.tex  $(TEXSRC) $(PROTEXSRC) figures
+	latex  a4.tex
+	bibtex a4
+	latex  a4.tex
+	latex  a4.tex
+	latex  a4.tex
+
+letter.dvi: letter.tex $(TEXSRC) $(PROTEXSRC) figures
+	latex  letter.tex
+	bibtex letter
+	latex  letter.tex
+	latex  letter.tex
+	latex  letter.tex
+
+html.dvi: html.tex $(TEXSRC) $(PROTEXSRC) figures
+	latex  html.tex
+	bibtex html
+	latex  html.tex
+	latex  html.tex
+	latex  html.tex
+
+a4.ps: a4.dvi
+	dvips -o $@ a4.dvi
+
+letter.ps: letter.dvi
+	dvips -o $@ letter.dvi
+
+html.ps: html.dvi
+	dvips -o $@ html.dvi
+
+a4.pdf: a4.ps
+	ps2pdf a4.ps
+
+letter.pdf: letter.ps
+	ps2pdf letter.ps
+
+html.pdf: html.ps
+	ps2pdf html.ps
+
+html:   html.dvi
+	latex2html -antialias_text -white html.tex
+	touch html
+
+pdf_scp: a4.pdf letter.pdf
+	scp -r a4.pdf letter.pdf gotm@80.198.12.199:doc/
+	touch pdf_scp
+
+html_scp: html
+	scp -r html/* gotm@80.198.12.199:html/
+	touch html_scp
+
+
+figures:
+	wget -nd -nH -q http://www.gotm.net/data_files/gotm-figs-4.0.gz
+	tar -xvzf gotm-figs-4.0.gz
+	$(RM) gotm-figs-4.0.gz
+
+clean:
+	$(RM) *.log *.toc *.aux *.bbl *.blg *.bac *~
+
+realclean: clean
+	$(RM) *.dvi *.ps *.pdf
+	$(RM) -rf html/ 
+	$(RM) -rf $(PROTEXSRC)
+
+distclean: realclean
+	$(RM) *.gz *.zip *.Z
+	$(RM) html html_scp pdf_scp 
+	$(RM) -rf figures
+

doc/README

+#
+#$Id: README,v 1.5 2005-07-18 07:56:19 lars Exp $
+#
+
+Currently, there are three versions of the GOTM documentation with the
+names coded as "papertype.filetype". These are:
+
+a4.filetype
+letter.filetype
+html.filetype
+
+"filetype" can be dvi, ps, or pdf. To produce these files type "make
+"papertype_filetype" in this directory. For example, 
+
+"make letter_pdf"
+
+will create the documention in US-letter format, which
+can be display with 
+
+"acroread letter.pdf".
+
+Similarly, the files "a4.pdf" and "html.pdf" can be produced, where
+"html.pdf" essentially corresponds to the paper version of the 
+GOTM web documentation. The web version is produced from the 
+latex source code by typing 
+
+"make html_web". 
+
+The html-pages are created by "latex2html" such that your result
+depends on the variables you have set in ".latex2html-init" in 
+your home directory (or their defaults if you don't have this file). 
+
+To copy the html-pages to the server type "make html_scp". 
+This option is available only to those that have the password. 

doc/a4.tex

+%
+%$Id: a4.tex,v 1.5 2007-03-15 07:47:15 kbk Exp $
+%
+
+\documentclass[a4paper,twoside,11pt]{article}
+
+% AMS math and symbols
+\usepackage{amsmath,amsfonts,amssymb,amsbsy,latexsym}
+
+% natural science bibliography
+\usepackage[round]{natbib}
+
+% definitions used in the GOTM-manual
+\input definitions.tex
+
+% graphics
+\usepackage{graphics}
+
+% to make pdf files look OK
+\usepackage{ae}
+
+% set page margins for print
+\setlength{\evensidemargin}{-0.4mm}
+\setlength{\oddsidemargin}{4.6mm}
+\setlength{\textwidth}{155mm}
+
+\pagestyle{myheadings}
+
+\renewcommand{\baselinestretch}{1.0}
+\begin{document}
+
+
+
+% the titlepage
+\begin{titlepage}
+
+
+{\sf \bf \LARGE
+ \begin{center}
+   Lars Umlauf $\bs \cdot$ Hans Burchard $\bs \cdot$ Karsten Bolding
+ \end{center}
+}
+
+\vspace{14mm}
+
+{\sf \bf \Huge
+ \begin{center}
+   GOTM
+ \end{center}
+}
+
+\vspace{6mm}
+
+{\sf \bf \LARGE
+ \begin{center}
+   Sourcecode \\
+      and \\
+Test Case Documentation
+ \end{center}
+}
+
+
+\vspace{5mm}
+
+{\sf \bf \Large
+ \begin{center}
+  Version 4.0