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CODAR radial currents processing
==================================
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You have to loggin to the CODAR server at UQAR.
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Then follow the directions:

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1. Check processed data
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   Go to **/Volumes/CodarData/Codar/SeaSonde/Data/Spectra/SpectraProcessed/**
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   - check that all files have been processed
   - If ok, remove all file (move to trash)
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2. RadialConfig
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   Go to **/Volumes/CodarData/Codar/SeaSonde/Configs/RadialConfigs/**
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   - Delete everything
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   Go to (for example) **/Volumes/CodarData/Codar/SeaSonde/Configs/RadialConfigs_PAP1_20130201_BAPM_MUSIC402002_nosmooth/**
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   - Copy the content of the folder into **/Volumes/CodarData/Codar/SeaSonde/Configs/RadialConfigs/**
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3. Antenna diagrams for processing
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Go to **/Volumes/CodarData/Codar/SeaSonde/Data/Loops/PATT_PAP1_2014_01_14_1154_NoSmooth.xlp**
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- Copy MeasPattern.txt and Phases.txt
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- Paste in **/Volumes/CodarData/Codar/SeaSonde/Configs/RadialConfigs/**
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- Open Header.txt and change line 19 if needed 
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- save  (MUSIC parameters 40 20 2 or 80 40 1)
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**ADD-ON Analysis on March 14, 2014**
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+ Go to **/Volumes/CodarData/Codar/SeaSonde/Configs/RadialConfigs/**
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+ Run “Seasonde Radial Site Setup”. 
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   In “Advanced”, uncheck “filtered and filled” and check “filtered” only.
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+ Save.
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Copy the content of the folder RadialConfigs back to the original folder, for example if what is in the “/RadialConfigs” folder comes from “/RadialConfigs_PAP1_20130201_BAPM_MUSIC402002_20Dsmooth”, after running the “Seasonde Radial Site Setup”, copy the content of “/RadialConfigs” back to “/RadialConfigs_PAP1_20130201_BAPM_MUSIC402002_20Dsmooth”.




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4. Spectra
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+ Go get spectra on disks (CODAR1 or CODAR2) (on desktop)
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+ Go to (for example) **/Volumes/Codar2/PAP1/Archives/Spectra/**
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+ Copy the day(s) we are interested in 
  (Attention: copy the CSS_....cs4 files in PAP1_CSS_... folder!!)
and paste in **/Volumes/CodarData/Codar/SeaSonde/Data/Spectra/SpectraToProcess/**
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==> Can also store spectra in **/Volumes/CodarData/Codar/SeaSonde/Data/Spectra/SpectraSeries**
before copy/paste in **SpectraToProcess**
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+ Once the spectra are in SpectraToProcess, the analysis starts automatically!
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ATTENTION: make sure all the files are copied in “SpectraToProcess” sometimes copy-paste does miss files….


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5. Retrieve processed data
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+ Go to **/Volumes/CodarData/Codar/SeaSonde/Data/Radials/**
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Processed data are in “Filtered”, “IdealPattern” and “MeasPattern” folders.

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+ Save data in appropriate folders (to be created if needs be)
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MUSIC 40-20-2                                                           
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* no smoothing   
* measured no filtered
* ideal no filtered
* measured filtered
* ideal filtered
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MUSIC 80-40-1   
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* no smoothing   
* measured no filtered
* ideal no filtered
* measured filtered
* ideal filtered
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MUSIC 40-20-2   
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* 20D smoothing  
* measured no filtered
* measured filtered
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MUSIC 80-40-1   
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* 20D smoothing  
* measured no filtered
* measured filtered



6. Transfer data to local disk
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7. Transform .ruv to .mat
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Using radial2uv.m. Be careful to the flag f.
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* f=0 for not filtered data; 
* f=1 for filtered data
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CHECK-UP
==========                                                                                
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+------------------------+------------+----------+----------+
| Header row, column 1   | Header 2   | Header 3 | Header 4 |
| (header rows optional) |            |          |          |
+========================+============+==========+==========+
| body row 1, column 1   | column 2   | column 3 | column 4 |
+------------------------+------------+----------+----------+
| body row 2             | Cells may span columns.          |
+------------------------+------------+---------------------+
| body row 3             | Cells may  | - Table cells       |
+------------------------+ span rows. | - contain           |
| body row 4             |            | - body elements.    |
+------------------------+------------+---------------------+
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..
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{|
|
|
|
|
|PAP
|STF
|-
|1. measured    
|MUSIC 40-20-2          
|no smoothing           
|no filtered    
|ok     
|ok
|-
|2. ideal       
|MUSIC 40-20-2  
|no smoothing
|no filtered    
|ok     
|ok
|-
|3. measured    
|MUSIC 40-20-2          
|no smoothing           
|filtered       
|ok     
|ok
|-
|4. ideal       
|MUSIC 40-20-2          
|no smoothing           
|filtered       
|ok     
|ok
|-
|5. measured    
|MUSIC 80-40-1          
|no smoothing           
|no filtered    
|ok     
|ok
|-
|6. ideal       
|MUSIC 80-40-1          
|no smoothing           
|no filtered    
|ok     
|ok
|-
|7. measured    
|MUSIC 80-40-1          
|no smoothing           
|filtered       
|ok     
|ok
|-
|8. ideal       
|MUSIC 80-40-1          
|no smoothing           
|filtered       
|ok     
|ok
|-
|9. measured    
|MUSIC 40-20-2          
|20D smoothing          
|no filtered    
|ok     
|ok
|-
|10. measured   
|MUSIC 40-20-2          
|20D smoothing          
|filtered       
|ok     
|ok
|-
|11. measured   
|MUSIC 80-40-1          
|20D smoothing          
|no filtered    
|ok     
|ok
|-
|12. measured   
|MUSIC 80-40-1          
|20D smoothing          
|filtered       
|ok     
|ok
|}


Modified by Marion Bandet on 2015/07/14