Commit 5fde9a30 authored by Marion Bandet's avatar Marion Bandet

update documentation

parent d001201d
......@@ -24,7 +24,7 @@
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......@@ -35,7 +35,7 @@
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accesskey="I">index</a></li>
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......@@ -103,7 +103,7 @@ Go to <strong>/Volumes/CodarData/Codar/SeaSonde/Data/Spectra/SpectraProcessed/</
</li>
</ol>
<blockquote>
<div>(Attention: copy the <a href="#id1"><span class="problematic" id="id2">CSS_</span></a>....cs4 files in <a href="#id3"><span class="problematic" id="id4">PAP1_CSS_</span></a>... folder!!)</div></blockquote>
<div>(Attention: copy the CSS_*.cs4 files in PAP1_CSS_... folder!!)</div></blockquote>
<p>and paste in <strong>/Volumes/CodarData/Codar/SeaSonde/Data/Spectra/SpectraToProcess/</strong></p>
<p>==&gt; Can also store spectra in <strong>/Volumes/CodarData/Codar/SeaSonde/Data/Spectra/SpectraSeries</strong>
before copy/paste in <strong>SpectraToProcess</strong></p>
......@@ -165,8 +165,7 @@ before copy/paste in <strong>SpectraToProcess</strong></p>
</ul>
</li>
</ol>
<div class="section" id="check-up">
<h2>CHECK-UP<a class="headerlink" href="#check-up" title="Permalink to this headline"></a></h2>
<p><strong>CHECK-UP</strong></p>
<table border="1" class="docutils">
<colgroup>
<col width="28%" />
......@@ -273,7 +272,6 @@ parameters</th>
</tr>
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</table>
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......@@ -282,20 +280,12 @@ parameters</th>
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<h3><a href="index.html">Table Of Contents</a></h3>
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<li><a class="reference internal" href="#">CODAR radial currents processing</a><ul>
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......@@ -325,7 +315,7 @@ parameters</th>
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......@@ -113,8 +113,8 @@ Superimposed are the 48-h averages</div>
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......@@ -150,7 +150,7 @@ Superimposed are the 48-h averages</div>
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<h1>WERA calibrations<a class="headerlink" href="#wera-calibrations" title="Permalink to this headline"></a></h1>
<p>In March 2015, we used data collected in September 2013 to compare old and new calibrations in order to know which ones we should use for the on-going analysis of currents data.</p>
<p>PAP1</p>
<div class="topic">
<p class="topic-title first">PAP1</p>
<p>RadialConfigs_PAP1_20121213_WAPM_MUSIC402002_5Dsmooth
from 2012-12-13 to 2013-02-01 19:50 UTC</p>
<p>RadialConfigs_PAP1_20130201_BAPM_MUSIC402002_nosmooth
from 2013-02-01 19:50 UTC to now</p>
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<div class="topic">
<p class="topic-title first">STF2</p>
<p>RadialConfigs_STF2_20121220_BAPM_MUSIC402002_nosmooth
from 2012-12-20 to 2013-02-06 12:00 UTC</p>
<p>RadialConfigs_PAP1_20130201_BAPM_MUSIC402002_nosmooth
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......@@ -51,14 +51,37 @@
<div class="section" id="wera-radial-currents-processing">
<h1>WERA radial currents processing<a class="headerlink" href="#wera-radial-currents-processing" title="Permalink to this headline"></a></h1>
<p>You have to loggin to the WERA server at UQAR.</p>
<div class="admonition note">
<p class="first admonition-title">Note</p>
<p class="last">~/ cd data1/PAO</p>
</div>
<p>or</p>
<div class="admonition note">
<p class="first admonition-title">Note</p>
<p class="last">~/ cd data2/PAB</p>
</div>
<p>Post-processing of WERA radial currents is much simpler than for the CODAR system.</p>
<p>The WERA system outputs data in folders identified by the year and Julian day (for example 2014101 for April 11, 2014).</p>
<p>In each folder we find .RFI and .SORT files for every hour (should find 24 files of each extention per day).</p>
<p>Use the shell script <strong>do_process_SORT_pol</strong> to generate <strong>.crad_pol_lst</strong> files. They will be found in the subfolder YYYYJJJ/results/.</p>
<p><strong>Use radiallst2uv.m to convert .lst to .mat files (To be verified).</strong></p>
<p>In each folder (e.g. ~/data2/PAO/2014174/raw/) we find .RFI and .SORT files for every hour (should find 24 files of each extention per day).</p>
<p>Use the shell script <strong>do_process_SORT_pol</strong> located in /home/wera/bin to generate <strong>.crad_pol_lst</strong> files.</p>
<div class="admonition note">
<p class="first admonition-title">Note</p>
<p class="last">For example: ~/do_process_SORT_pol 2013244 2013273 /home/wera/data1/PAO</p>
</div>
<p>The resulting .crad_pol_lst files will be found in the subfolder YYYYJJJ/results/new/.</p>
<p>To download radial currents from the sites:</p>
<p>rsync -v -e ssh <a class="reference external" href="mailto:wera&#37;&#52;&#48;wera-lsle-pao&#46;dyndns&#46;org">wera<span>&#64;</span>wera-lsle-pao<span>&#46;</span>dyndns<span>&#46;</span>org</a>:/home/wera/data/ftp_transfer/${DATE}${HEURE}*_ascii* .</p>
<div class="admonition note">
<p class="first admonition-title">Note</p>
<p class="last">rsync -v -e ssh <a class="reference external" href="mailto:wera&#37;&#52;&#48;wera-lsle-pao&#46;dyndns&#46;org">wera<span>&#64;</span>wera-lsle-pao<span>&#46;</span>dyndns<span>&#46;</span>org</a>:/home/wera/data/ftp_transfer/${DATE}${HEURE}*_ascii* .</p>
</div>
<p>with for example <strong>DATE=2015121</strong> (yyyyJJJ) and <strong>HEURE=0100</strong></p>
<p>OR</p>
<div class="admonition note">
<p class="first admonition-title">Note</p>
<p class="last">rsync -v -e ssh <a class="reference external" href="mailto:wera&#37;&#52;&#48;132&#46;215&#46;11&#46;14">wera<span>&#64;</span>132<span>&#46;</span>215<span>&#46;</span>11<span>&#46;</span>14</a>:~data1/PAO/2013244/results/new/*.crad_pol_lst /run/media/bandma01/SeagateWireless/MEOPAR/DATA/HFRs/PAO/version5_PAO_ol_noFullCal/NewCalibrations/</p>
</div>
<p>Use <strong>radiallst2uv.m</strong> to convert .lst to .mat files.</p>
</div>
......
==================================
***********************************
CODAR radial currents processing
==================================
***********************************
You have to loggin to the CODAR server at UQAR.
Then follow the directions:
......@@ -60,7 +60,7 @@ Copy the content of the folder RadialConfigs back to the original folder, for ex
- Go to (for example) **/Volumes/Codar2/PAP1/Archives/Spectra/**
- Copy the day(s) we are interested in
(Attention: copy the CSS_....cs4 files in PAP1_CSS_... folder!!)
(Attention: copy the CSS\_\*.cs4 files in PAP1\_CSS\_... folder!!)
and paste in **/Volumes/CodarData/Codar/SeaSonde/Data/Spectra/SpectraToProcess/**
==> Can also store spectra in **/Volumes/CodarData/Codar/SeaSonde/Data/Spectra/SpectraSeries**
......@@ -129,8 +129,8 @@ MUSIC 80-40-1
CHECK-UP
==========
**CHECK-UP**
+-------------------+---------------+------------+-----------+------+------+
| Measured or Ideal | MUSIC | smoothing? | filtered? | PAP | STF |
......
WERA calibrations
===================
In March 2015, we used data collected in September 2013 to compare old and new calibrations in order to know which ones we should use for the on-going analysis of currents data.
PAP1
.. topic:: PAP1
RadialConfigs_PAP1_20121213_WAPM_MUSIC402002_5Dsmooth
from 2012-12-13 to 2013-02-01 19:50 UTC
RadialConfigs_PAP1_20130201_BAPM_MUSIC402002_nosmooth
from 2013-02-01 19:50 UTC to now
.. topic:: STF2
RadialConfigs_STF2_20121220_BAPM_MUSIC402002_nosmooth
from 2012-12-20 to 2013-02-06 12:00 UTC
RadialConfigs_PAP1_20130201_BAPM_MUSIC402002_nosmooth
from 2013-02-01 19:50 UTC to now
WERA radial currents processing
==================================
You have to loggin to the WERA server at UQAR.
.. note:: ~/ cd data1/PAO
or
.. note:: ~/ cd data2/PAB
Post-processing of WERA radial currents is much simpler than for the CODAR system.
The WERA system outputs data in folders identified by the year and Julian day (for example 2014101 for April 11, 2014).
In each folder we find .RFI and .SORT files for every hour (should find 24 files of each extention per day).
In each folder (e.g. ~/data2/PAO/2014174/raw/) we find .RFI and .SORT files for every hour (should find 24 files of each extention per day).
Use the shell script **do_process_SORT_pol** to generate **.crad_pol_lst** files. They will be found in the subfolder YYYYJJJ/results/.
Use the shell script **do_process_SORT_pol** located in /home/wera/bin to generate **.crad_pol_lst** files.
**Use radiallst2uv.m to convert .lst to .mat files (To be verified).**
.. note:: For example: ~/do_process_SORT_pol 2013244 2013273 /home/wera/data1/PAO
..
The resulting .crad_pol_lst files will be found in the subfolder YYYYJJJ/results/new/.
To download radial currents from the sites:
rsync -v -e ssh wera@wera-lsle-pao.dyndns.org:/home/wera/data/ftp_transfer/${DATE}${HEURE}*_ascii* .
.. note:: rsync -v -e ssh wera@wera-lsle-pao.dyndns.org:/home/wera/data/ftp_transfer/${DATE}${HEURE}*_ascii* .
with for example **DATE=2015121** (yyyyJJJ) and **HEURE=0100**
OR
.. note:: rsync -v -e ssh wera@132.215.11.14:~data1/PAO/2013244/results/new/\*.crad_pol_lst /run/media/bandma01/SeagateWireless/MEOPAR/DATA/HFRs/PAO/version5_PAO_ol_noFullCal/NewCalibrations/
Use **radiallst2uv.m** to convert .lst to .mat files.
**************
Calibrations
**************
######
CODAR
######
**POINTE-AU-PERE:**
***********************
Please see notes from field work on `2013-02-01`_
.. _2013-02-01: http://demeter.uqar.ca/submesoscale/index.php/Pap
Starting 2013-02-01: **Change of frequency** due to a misreading in the frequency permits...
* Up to 2013-02-01 19:50 UTC use the "old" antenna diagram to do the calibration
* From 2013-02-01 19:50 UTC use the "new" antenna diagram
We reprocessed all data from CODAR PAP **starting 2012-12-13** date at which the site was operational.
.. topic:: from 2012-12-13 to 2013-02-01 19:50 UTC
RadialConfigs_PAP1_20121213_WAPM_MUSIC402002_5Dsmooth
Steps to generate new RadialConfigs files:
* Copy all content of the directory in **RadialConfigs**
* run SeaSondeRadialSetUp
* change output: metrics, processing check MUSIC 40 20 02, no smoothing, filtered
To generate the new Antenna diagram:
* cd Data/Loops/PATT_PAP1_2012_12_15...xlp
==> open .patt
- Walk APM up to 2013-02-01
- Boat APM until now
.. topic:: from 2013-02-01 19:50 UTC to now
RadialConfigs_PAP1_20130201_BAPM_MUSIC402002_nosmooth
**SAINTE-FLAVIE**
*****************
.. topic:: from 2012-12-20 to 2013-02-06 12:00 UTC
RadialConfigs_STF2_20121220_BAPM_MUSIC402002_nosmooth
.. topic:: from 2013-02-01 19:50 UTC to now
RadialConfigs_PAP1_20130201_BAPM_MUSIC402002_nosmooth
#####
WERA
#####
COMPARISON OLD/NEW WERA CALIBRATIONS
**************************************
In March 2015, we used data collected in September 2013 to compare old and new calibrations in order to know which ones we should use for the on-going analysis of currents data.
.. figure:: figures/CompaNewcalib_ADCP_WERA_Sept2013_PAO.png
:width: 500px
:align: center
:height: 250px
Hourly radial currents from ADCP bin 2 and HFR WERA at PAO - September 2013
Superimposed are the 48-h averages
.. figure:: figures/Compa_old-newcalib_ADCP_WERA_Sept2013_PAO.png
:width: 500px
:align: center
:height: 250px
.. figure:: figures/Compa_old-newcalib_ADCP_WERA_Sept2013_PAO_corrcoef.png
:width: 500px
:align: center
:height: 250px
In March 2015, we used data collected in September 2013 to compare old and new calibrations in order to know which ones we should use for the on-going analysis of currents data.
experiments conducted in LSLE
**********************************
Experiments conducted in LSLE
**********************************
20130515
20130826
20130830
20140506
......@@ -16,10 +16,11 @@ Postprocessing
Documentation about the steps of the analysis
.. toctree::
:maxdepth: 2
:maxdepth: 3
CODARprocessing
WERAprocessing
calibration
Comparison_WERA-ADCP_Sept2013
CurrentsCombination
......@@ -31,7 +32,7 @@ Experiments
Below are the field experiments used to conduct comparisons between HFR and buoys/ADCP data/ model outputs.
.. toctree::
:maxdepth: 2
:maxdepth: 3
20130515
20130826
......
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<div class="section" id="calibrations">
<h1>Calibrations<a class="headerlink" href="#calibrations" title="Permalink to this headline"></a></h1>
<div class="section" id="codar">
<h2>CODAR<a class="headerlink" href="#codar" title="Permalink to this headline"></a></h2>
<div class="section" id="pointe-au-pere">
<h3><strong>POINTE-AU-PERE:</strong><a class="headerlink" href="#pointe-au-pere" title="Permalink to this headline"></a></h3>
<p>Please see notes from field work on <a class="reference external" href="http://demeter.uqar.ca/submesoscale/index.php/Pap">2013-02-01</a></p>
<p>Starting 2013-02-01: <strong>Change of frequency</strong> due to a misreading in the frequency permits...</p>
<blockquote>
<div><ul class="simple">
<li>Up to 2013-02-01 19:50 UTC use the &#8220;old&#8221; antenna diagram to do the calibration</li>
<li>From 2013-02-01 19:50 UTC use the &#8220;new&#8221; antenna diagram</li>
</ul>
</div></blockquote>
<p>We reprocessed all data from CODAR PAP <strong>starting 2012-12-13</strong> date at which the site was operational.</p>
<div class="topic">
<p class="topic-title first">from 2012-12-13 to 2013-02-01 19:50 UTC</p>
<p>RadialConfigs_PAP1_20121213_WAPM_MUSIC402002_5Dsmooth</p>
</div>
<p>Steps to generate new RadialConfigs files:</p>
<blockquote>
<div><ul class="simple">
<li>Copy all content of the directory in <strong>RadialConfigs</strong></li>
<li>run SeaSondeRadialSetUp</li>
<li>change output: metrics, processing check MUSIC 40 20 02, no smoothing, filtered</li>
</ul>
</div></blockquote>
<p>To generate the new Antenna diagram:</p>
<blockquote>
<div><ul>
<li><dl class="first docutils">
<dt>cd Data/Loops/PATT_PAP1_2012_12_15...xlp</dt>
<dd><p class="first last">==&gt; open .patt
- Walk APM up to 2013-02-01
- Boat APM until now</p>
</dd>
</dl>
</li>
</ul>
</div></blockquote>
<div class="topic">
<p class="topic-title first">from 2013-02-01 19:50 UTC to now</p>
<p>RadialConfigs_PAP1_20130201_BAPM_MUSIC402002_nosmooth</p>
</div>
</div>
<div class="section" id="sainte-flavie">
<h3><strong>SAINTE-FLAVIE</strong><a class="headerlink" href="#sainte-flavie" title="Permalink to this headline"></a></h3>
<div class="topic">
<p class="topic-title first">from 2012-12-20 to 2013-02-06 12:00 UTC</p>
<p>RadialConfigs_STF2_20121220_BAPM_MUSIC402002_nosmooth</p>
</div>
<div class="topic">
<p class="topic-title first">from 2013-02-01 19:50 UTC to now</p>
<p>RadialConfigs_PAP1_20130201_BAPM_MUSIC402002_nosmooth</p>
</div>
</div>
</div>